miRBase entry: cel-mir-2220

Stem-loop cel-mir-2220


Accession
MI0010973
Description
Caenorhabditis elegans cel-mir-2220 precursor miRNA


Sequence

283 reads, 4 reads per million, 12 experiments
GUAAGACCAUAAACUAUUUAUCaauucaucauuugaUCAAUUGUUUGUGGACUUACAG
(((((.((((((((.(((.(((((........))))).))).)))))))).)))))..

Structure
--     A        U   U     uuc 
  GUAAG CCAUAAAC AUU AUCaa   a
  ||||| |||||||| ||| |||||    
  CAUUC GGUGUUUG UAA Uaguu   u
GA     A        U   C     uac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrX: 1873827-1873884 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from cel-mir-2220
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-2220-5p

Accession MIMAT0011461
Description Caenorhabditis elegans cel-miR-2220-5p mature miRNA
Sequence 1 - GUAAGACCAUAAACUAUUUAUC - 22
Evidence experimental
Illumina [1]

Mature cel-miR-2220-3p

Accession MIMAT0011462
Description Caenorhabditis elegans cel-miR-2220-3p mature miRNA
Sequence 37 - UCAAUUGUUUGUGGACUUACAG - 58
Evidence experimental
Illumina [1]
Database links
Predicted targets

References

  1. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54