miRBase entry: cel-mir-2212

Stem-loop cel-mir-2212


Accession
MI0010962
Description
Caenorhabditis elegans cel-mir-2212 precursor miRNA

Literature search
1 open access papers mention cel-mir-2212
(1 sentences)

Sequence

853 reads, 15 reads per million, 14 experiments
UGGCAGAUCAUAGGCUGACUUUGcaagcauuuuauacaAAGUGGCAUUUGAUAAGCCAUC
((((..((((...(((.((((((.............)))))))))...))))..))))..

Structure
--    AG    UAG   G      caagc 
  UGGC  AUCA   GCU ACUUUG     a
  ||||  ||||   ||| ||||||     u
  ACCG  UAGU   CGG UGAAac     u
CU    AA    UUA   -      auauu 


Annotation confidence Not enough data
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Genome context
chrX: 16207829-16207888 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cel-mir-2212
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-2212-5p

Accession MIMAT0011439
Description Caenorhabditis elegans cel-miR-2212-5p mature miRNA
Sequence 1 - UGGCAGAUCAUAGGCUGACUUUG - 23
Evidence experimental
Illumina [1]
Database links
Predicted targets

Mature cel-miR-2212-3p

Accession MIMAT0011440
Description Caenorhabditis elegans cel-miR-2212-3p mature miRNA
Sequence 39 - AAGUGGCAUUUGAUAAGCCAUC - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54