miRBase entry: cel-mir-2209c

Stem-loop cel-mir-2209c


Accession
MI0010959
Description
Caenorhabditis elegans cel-mir-2209c precursor miRNA

Literature search
2 open access papers mention cel-mir-2209c
(2 sentences)

Sequence

47 reads, 2 reads per million, 9 experiments
GAGUGUAACCGCACGUCUUGUUUcaaaacucaauauauggaAAAAGACCACCGGUUACACUACA
.((((((((((...(((((.(((((............))))).)))))...))))))))))...

Structure
--G          CAC     G     aaacu 
   AGUGUAACCG   GUCUU UUUca     c
   ||||||||||   ||||| |||||      
   UCACAUUGGC   CAGAA Aaggu     a
ACA          CAC     A     auaua 


Annotation confidence Not enough data
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Genome context
chrIV: 1027218-1027281 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from cel-mir-2209c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-2209c-5p

Accession MIMAT0011433
Description Caenorhabditis elegans cel-miR-2209c-5p mature miRNA
Sequence 1 - GAGUGUAACCGCACGUCUUGUUU - 23
Evidence experimental
Illumina [1]

Mature cel-miR-2209c-3p

Accession MIMAT0011434
Description Caenorhabditis elegans cel-miR-2209c-3p mature miRNA
Sequence 42 - AAAAGACCACCGGUUACACUACA - 64
Evidence experimental
Illumina [1]
Database links
Predicted targets

References

  1. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54