miRBase entry: cel-mir-2207

Stem-loop cel-mir-2207


Accession
MI0010955
Description
Caenorhabditis elegans cel-mir-2207 precursor miRNA


Sequence

63 reads, 1 reads per million, 11 experiments
UGUGAAUUGAGACUGUGUAUAAGaauguaaggaggagaggggccguucguaucguucgucuuAUGCACAGGCUCAAUGCACACA
((((.((((((.((((((((((((.((.((.((...(((......)))...)).)))))))))))))))).)))))).))))..

Structure
--    A      A            a  u  g  gga   gg 
  UGUG AUUGAG CUGUGUAUAAGa ug aa ga   gag  g
  |||| |||||| |||||||||||| || || ||   |||   
  ACAC UAACUC GACACGUAuucu gc uu cu   cuu  c
AC    G      G            -  -  g  aug   gc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrII: 11600300-11600383 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cel-mir-2207
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-2207-5p

Accession MIMAT0011425
Description Caenorhabditis elegans cel-miR-2207-5p mature miRNA
Sequence 1 - UGUGAAUUGAGACUGUGUAUAAG - 23
Evidence experimental
Illumina [1]
Database links
Predicted targets

Mature cel-miR-2207-3p

Accession MIMAT0011426
Description Caenorhabditis elegans cel-miR-2207-3p mature miRNA
Sequence 63 - AUGCACAGGCUCAAUGCACACA - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54