Stem-loop sbi-MIR1435b

Accession

MI0010932

Description

Sorghum bicolor sbi-MIR1435b precursor miRNA

Gene family

MIPF0000760; MIR1435

Sequence

cuauagaauuauaaaauaaucuuuuacucucuccaucaccgaauaaaucaauuccuaaaguUUUCUUAAGUCAAACCUUUUaaaguuuaacaaaauuuauagaaaagagcaccaaaauuuauggcacuaguauaaaauguugucauaauaugcugauuugguaucauaaauacuugugcucuuuucuacaaauucaaucaaacguaaaaaaaguuuugauuuaaaauaacucuacgaauugaauggauuuauuuauggauggaguga
...........................((.(((((((...((((((((((((((.((.((((...((((((((((.(((((...((((.....(((((.(((((((((((((....((((((((.(((((((((..(((....)))..)))))).....))).))))))))....))))))))))))).))))).....)))).....))))).))))))))))...)))).)).))))))).....)))))))...))))))).))

Structure

cuauagaauuauaaaauaaucuuuuac  u       acc       -----       c  a    UUC          C     --aaa    aacaa     a             caaa        c   -----      aa   u 
                           uc cuccauc   gaauaaa     ucaauuc ua aguU   UUAAGUCAAA CUUUU     guuu     aauuu uagaaaagagcac    auuuaugg acu     aguaua  aug u
                           || |||||||   |||||||     ||||||| || ||||   |||||||||| |||||     ||||     ||||| |||||||||||||    |||||||| |||     ||||||  |||  
                           ag gagguag   uuuauuu     aguuaag au ucaa   aauuuaguuu gaaaa     caaa     uuaaa aucuuuucucgug    uaaauacu ugg     ucguau  uac g
---------------------------  u       gua       aggua       c  c    uaa          u     aaaug    cuaac     c             uuca        a   uuuag      aa   u 

Annotation confidence Not enough data

Genome context

chr7: 61188721-61188987 [-]

Mature sbi-miR1435b

• Accession: MIMAT0011392
• Description: Sorghum bicolor sbi-miR1435b mature miRNA
• Sequence: 62 - UUUCUUAAGUCAAACCUUUU - 81
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556