miRBase entry: sbi-MIR821d

Stem-loop sbi-MIR821d


Accession
MI0010928
Description
Sorghum bicolor sbi-MIR821d precursor miRNA
Gene family
MIPF0000350; MIR821


Sequence

aaaAAGUCAUCAACAACAAAGUUGuagaaaucauuaauaucuaaaacuuuuauuuuggucauuuauccauucgauaaagugauagcaacauuguucauaaauuuuacaaaucccucguaugguuucauaaacuauaagagagauauguaaauuuugugaacaauauuacuaucacuuucucggaugaacaaauaccuaaaauaaaaguuguauauauugaugaguucuacaacuuuuauguucaugaauuuuucgaaugaaauc
(((((.((((.((((..((((((((((((.((((((((((.((.(((((((((((((((.((((...(((((((.((((((((((.((.((((((((((((.((((((.(((.(((.((((((((...)))))))).))).))).)))))).)))))))))))).)).)))))))))).)))))))...))))))).)))))))))))).)).)))))))))).))))))))))))..)))).)))).)))))...........

Structure
-----------     G    C    AC            a          c  a            -   c    auc       u          c  c            u      a   c   g        c 
           aaaAA UCAU AACA  AAAGUUGuagaa ucauuaauau ua aacuuuuauuuu ggu auuu   cauucga aaagugauag aa auuguucauaaa uuuaca auc cuc uaugguuu  
           ||||| |||| ||||  |||||||||||| |||||||||| || |||||||||||| ||| ||||   ||||||| |||||||||| || |||||||||||| |||||| ||| ||| |||||||| a
           uuuuu agua uugu  uuucaacaucuu aguaguuaua au uugaaaauaaaa cca uaaa   guaggcu uuucacuauc uu uaacaaguguuu aaaugu uag gag auaucaaa  
cuaaaguaagc     a    c    au            g          u  g            u   -    caa       c          a  a            u      a   a   a        u 


Annotation confidence Not enough data
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Genome context
chr6: 29629764-29630027 [+]

Database links

Mature sbi-miR821d

Accession MIMAT0011388
Description Sorghum bicolor sbi-miR821d mature miRNA
Sequence 4 - AAGUCAUCAACAACAAAGUUG - 24
Evidence not_experimental

References

  1. PubMed ID: 19189423
    The Sorghum bicolor genome and the diversification of grasses
    "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
    "Nature (2009) 457:551-556