miRBase entry: sbi-MIR437p

Stem-loop sbi-MIR437p


Accession
MI0010916
Description
Sorghum bicolor sbi-MIR437p precursor miRNA
Gene family
MIPF0000746; MIR437

Literature search
3 open access papers mention sbi-MIR437p
(5 sentences)

Sequence

augucaaacuucucuaacacugaccgaguuuguaggacaaauauauacuagcaucuacaauaccaaauaaaugcacuaucaagagucaagacaaauuucaugguggauuugaugaaacuaauuugauuuuguauguguugguccauuuuuucaauaaacuuggucAAAGUUAGAGAAGUUUGACUUag
..((((((((((((((((..(((((((((((((.(((.((((....((((((((.(((((...(((((((((.((((((...((((........)))).)))))).))))..........)))))...))))).))))))))..)))).))).)))))))))))))..))))))))))))))))....

Structure
--au                ac             a   c    auau        c     uac     ----------    g      caa    caa 
    gucaaacuucucuaac  ugaccgaguuugu gga aaau    acuagcau uacaa   caaau          aaau cacuau   gagu   g
    ||||||||||||||||  ||||||||||||| ||| ||||    |||||||| |||||   |||||          |||| ||||||   ||||    
    CAGUUUGAAGAGAUUG  Acugguucaaaua cuu uuua    ugguugug auguu   guuua          uuua guggua   uuua   a
gaUU                AA             a   u    --cc        u     uua     aucaaaguag    g      --c    aac 


Annotation confidence Not enough data
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Genome context
chr4: 8535896-8536083 [-]

Database links

Mature sbi-miR437p

Accession MIMAT0011376
Description Sorghum bicolor sbi-miR437p mature miRNA
Sequence 166 - AAAGUUAGAGAAGUUUGACUU - 186
Evidence not_experimental

References

  1. PubMed ID: 19189423
    The Sorghum bicolor genome and the diversification of grasses
    "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
    "Nature (2009) 457:551-556