miRBase entry: sbi-MIR396e

Stem-loop sbi-MIR396e


Accession
MI0010898
Description
Sorghum bicolor sbi-MIR396e precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
3 open access papers mention sbi-MIR396e
(9 sentences)

Sequence

uUUCCACAGGCUUUCUUGAACUGugaacucguggggguagaaaccuugcuggguuugguucccaugucggauggaaugcuuggcuccucccagcgauucuuccccggccgugagugaauugaauugcgggguuucucgcuucgcucggccggcucuaccuguugaugguucaagaaagcccauggaaac
((((((..((((((((((((((((.(((..(((((((...((((((....))))))....))).....(((.((((((((.((......))))).))))))))((((((..(((((((.......(((((....))))))))))))))))))..))))..))).))))))))))))))))..)))))).

Structure
-      CA                g   uc    ggguagaaaccuugcuggguuugguucccaugucggauggaaugcuuggcuccucccagcgauucuucc      gu       uugaauu     g 
 uUUCCA  GGCUUUCUUGAACUGu aac  gugg                                                                     ccggcc  gagugaa       gcggg u
 ||||||  |||||||||||||||| |||  ||||                                                                     ||||||  |||||||       |||||  
 aaaggu  ccgaaagaacuuggua uug  cauc                                                                     ggccgg  cucgcuu       cgcuc u
c      ac                g   uc    -------------------------------------------------------------------uc      --       -------     u 


Annotation confidence Not enough data
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Genome context
chr6: 59881923-59882111 [+]

Database links

Mature sbi-miR396e

Accession MIMAT0011358
Description Sorghum bicolor sbi-miR396e mature miRNA
Sequence 2 - UUCCACAGGCUUUCUUGAACUG - 23
Evidence not_experimental

References

  1. PubMed ID: 19189423
    The Sorghum bicolor genome and the diversification of grasses
    "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
    "Nature (2009) 457:551-556