miRBase entry: sbi-MIR395l

Stem-loop sbi-MIR395l


Accession
MI0010896
Description
Sorghum bicolor sbi-MIR395l precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
4 open access papers mention sbi-MIR395l
(33 sentences)

Sequence

guucccuucaagcacuucacauggagcauuauuugucuuggagaaagcuuaauuugaugcauuGUGAAGUGCUUGGGGGAACUC
(((((((.(((((((((((((....((((((.(((.(((.....)))..)))..))))))..))))))))))))))))))))..

Structure
--       u             ugga      -u   -u   g 
  guucccu caagcacuucaca    gcauua  uug  cuu g
  ||||||| |||||||||||||    ||||||  |||  ||| a
  CAAGGGG GUUCGUGAAGUGu    cguagu  aau  gaa g
CU       -             --ua      uu   uc   a 


Annotation confidence Not enough data
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Genome context
chr7: 4624021-4624104 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from sbi-MIR395l
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sbi-miR395l

Accession MIMAT0011356
Description Sorghum bicolor sbi-miR395l mature miRNA
Sequence 64 - GUGAAGUGCUUGGGGGAACUC - 84
Evidence not_experimental

References

  1. PubMed ID: 19189423
    The Sorghum bicolor genome and the diversification of grasses
    "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
    "Nature (2009) 457:551-556