Stem-loop sbi-MIR395j

Accession

MI0010894

Description

Sorghum bicolor sbi-MIR395j precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

4 open access papers mention sbi-MIR395j
(30 sentences)

Sequence

guucccuucaagcacuucacaugaagcucuuugcauuauauuggcggauguagcauugagaccaauGUGAAGUGUUUGGGGGAACUC
(((((((.((((((((((((((....(((..(((..((((((....)))))))))..)))....)))))))))))))))))))))..

Structure

--       u              gaag   uu   au      g 
  guucccu caagcacuucacau    cuc  ugc  uauauu g
  ||||||| ||||||||||||||    |||  |||  ||||||  
  CAAGGGG GUUUGUGAAGUGua    gag  acg  auguag c
CU       -              acca   uu   --      g 

Annotation confidence Not enough data

Genome context

chr7: 4623545-4623631 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from sbi-MIR395j

Mature sbi-miR395j

• Accession: MIMAT0011354
• Description: Sorghum bicolor sbi-miR395j mature miRNA
• Sequence: 67 - GUGAAGUGUUUGGGGGAACUC - 87
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556