Stem-loop sequence sbi-MIR395j

Accession

MI0010894 (change log)

Description

Sorghum bicolor miR395j stem-loop

Gene family

MIPF0000016; MIR395

Literature search

4 open access papers mention sbi-MIR395j
(30 sentences)

Stem-loop

   --       u              gaag   uu   au      g 
5'   guucccu caagcacuucacau    cuc  ugc  uauauu g
     ||||||| ||||||||||||||    |||  |||  ||||||  
3'   caagggg guuugugaagugua    gag  acg  auguag c
   cu       -              acca   uu   --      g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sorghum_bicolor_NCBIv3; GCA_000003195.3): chr7: 4623545-4623631 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sbi-MIR395j

• sbi-MIR395i: chr7: 4623362-4623458 [+]
• sbi-MIR395j: chr7: 4623545-4623631 [+]
• sbi-MIR395k: chr7: 4623715-4623794 [+]
• sbi-MIR395l: chr7: 4624021-4624104 [+]

Database links

• miRBase Tracker:MI0010894

Mature sequence sbi-miR395j

• Accession: MIMAT0011354
• Sequence: 67 - gugaaguguuugggggaacuc - 87
• Evidence: by similarity; MI0005088

References

1. PMID:19189423 "The Sorghum bicolor genome and the diversification of grasses" Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare Nature. 457:551-556(2009).