miRBase entry: sbi-MIR319b

Stem-loop sbi-MIR319b


Accession
MI0010886
Description
Sorghum bicolor sbi-MIR319b precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
5 open access papers mention sbi-MIR319b
(15 sentences)

Sequence

gagagcucucuucaguccacucuaaaauggcuguagaguuucauuagcugccgacucauccauucaccuaccaagaaccauggacaagcgauagguuuggucuugguagccgaguggguggcgcgggagcuaaaaucaagcucuacgcuguuuauggUUGGACUGAAGGGUGCUCCCuu
..((((.((((((((((((..((((((((((.(((((((((..((((((.(((..((((((((((..(((((((((.(((..(((.........)))))))))))))))..))))))))))..))).))))))....)))))))))))))))).))).)))))))))))).))))....

Structure
--ga    u            cu   -       u         --ca      g   ac          ac         a   ug   aag 
    gagc cucuucagucca  cua aaauggc guagaguuu    uuagcu ccg  ucauccauuc  cuaccaaga cca  gac   c
    |||| ||||||||||||  ||| ||||||| |||||||||    |||||| |||  ||||||||||  ||||||||| |||  |||   g
    CUCG GGGAAGUCAGGU  ggu uuugucg caucucgaa    aaucga ggc  ggugggugag  gaugguucu ggu  uug   a
uuCC    U            -U   a       -         cuaa      g   gc          cc         -   --   gau 


Annotation confidence Not enough data
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Genome context
chr3: 58355317-58355495 [-]

Database links

Mature sbi-miR319b

Accession MIMAT0011346
Description Sorghum bicolor sbi-miR319b mature miRNA
Sequence 158 - UUGGACUGAAGGGUGCUCCC - 177
Evidence not_experimental

References

  1. PubMed ID: 19189423
    The Sorghum bicolor genome and the diversification of grasses
    "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
    "Nature (2009) 457:551-556