miRBase entry: sbi-MIR169n

Stem-loop sbi-MIR169n


Accession
MI0010879
Description
Sorghum bicolor sbi-MIR169n precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
4 open access papers mention sbi-MIR169n
(23 sentences)

Sequence

ggUAGCCAAGGAUGACUUGCCUAuauccucuaugaaggaucagcaaauaucgaggcuuugaguggucucaugggcagucuccuuggcuagccu
((((((((((((.((((.(((((((((((......)))))...........((((((......))))))))))))))))))))))))).))).

Structure
-   -         U    U      auccucuaugaaggaucagcaaauauc      uu 
 ggU AGCCAAGGA GACU GCCUAu                           gaggcu  g
 ||| ||||||||| |||| ||||||                           ||||||   
 ccg ucgguuccu cuga cgggua                           cucugg  a
u   a         -    -      ---------------------------      ug 


Annotation confidence Not enough data
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Genome context
chr7: 62255445-62255537 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from sbi-MIR169n
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sbi-miR169n

Accession MIMAT0011339
Description Sorghum bicolor sbi-miR169n mature miRNA
Sequence 3 - UAGCCAAGGAUGACUUGCCUA - 23
Evidence not_experimental

References

  1. PubMed ID: 19189423
    The Sorghum bicolor genome and the diversification of grasses
    "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
    "Nature (2009) 457:551-556