Stem-loop sequence mtr-MIR2118

Accession

MI0010858 (change log)

Description

Medicago truncatula miR2118 stem-loop

Gene family

MIPF0000745; MIR2118

Literature search

4 open access papers mention mtr-MIR2118
(12 sentences)

Stem-loop

   --a     a  a  -        u aaa    uu        u      u     a   -       aacagaucuaauucau 
5'    gagag ga ag ggaaaggg g   gagc  gaggaagu auggga auggg gga ucgguaa                c
      ||||| || || |||||||| |   ||||  |||||||| |||||| ||||| ||| |||||||                 
3'    cucuc cu uc ccuuucuc c   cuug  uuccuuua uauccu uaccc ccu agccauu                u
   uac     -  c  a        u ---    uu        u      -     a   u       ucuuuaauaaguuaag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): AC235678.1: 74374-74532 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR2118

• mtr-MIR2118: AC235678.1: 74374-74532 [-]
• mtr-MIR482: AC235678.1: 65790-65893 [+]

Database links

• miRBase Tracker:MI0010858

Mature sequence mtr-miR2118

• Accession: MIMAT0011318
• Sequence: 98 - uuaccgauuccacccauuccua - 119
• Evidence: experimental; 454 [1], Northern [1]

References

1. PMID:19555436 "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families" Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R New Phytol. 184:85-98(2009).