miRBase entry: dre-mir-196d

Stem-loop dre-mir-196d


Accession
MI0010853
Description
Danio rerio dre-mir-196d precursor miRNA
Gene family
MIPF0000031; mir-196

Literature search
8 open access papers mention dre-mir-196d
(27 sentences)

Sequence

441 reads, 32 reads per million, 10 experiments
agugauuUAGGUAGUUUUAUGUUGUUGGGcucuauuuuauauccccgcaacacgaaacugucuuaauugccu
.((((((.((((((((((.((((((.(((.............))).)))))).)))))))))).))))))..

Structure
-a      U          A      U   cucua 
  gugauu AGGUAGUUUU UGUUGU GGG     u
  |||||| |||||||||| |||||| |||     u
  cguuaa ucugucaaag acaacg ccc     u
uc      u          c      c   uauau 


Annotation confidence High
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Genome context
chr16: 20913413-20913484 [+]

Database links

Mature dre-miR-196d

Accession MIMAT0011313
Description Danio rerio dre-miR-196d mature miRNA
Sequence 8 - UAGGUAGUUUUAUGUUGUUGGG - 29
Evidence experimental
454 [1]
Database links
Predicted targets

References

  1. PubMed ID: 19397817
    Parallel DNA pyrosequencing unveils new zebrafish microRNAs
    Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA
    BMC Genomics (2009) 10:195