miRBase entry: dre-mir-2188

Stem-loop dre-mir-2188


Accession
MI0010850
Description
Danio rerio dre-mir-2188 precursor miRNA
Gene family
MIPF0000812; mir-2188

Literature search
1 open access papers mention dre-mir-2188
(113 sentences)

Sequence

3646 reads, 437 reads per million, 10 experiments
ggacaauaucagcaaugugagaAAGGUCCAACCUCACAUGUCCugugaggcugaaggaaggCUGUGUGAGGUUAGACCUAUCccacacggcccguauucuuccc
(((.(((((..((..((((.((.(((((.(((((((((((.(((..............))).))))))))))).))))).)).))))..))..)))))..))).

Structure
-   -c     ca  aa    a  A     C           U   gugagg 
 gga  aauau  gc  ugug ga AGGUC AACCUCACAUG CCu      c
 |||  |||||  ||  |||| || ||||| ||||||||||| |||       
 ccu  uuaug  cg  acac CU UCCAG UUGGAGUGUGU gga      u
c   uc     cc  gc    c  A     A           C   aggaag 


Annotation confidence High
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Genome context
chr5: 69021859-69021962 [-]

Database links

Mature dre-miR-2188-5p

Accession MIMAT0011309
Description Danio rerio dre-miR-2188-5p mature miRNA
Sequence 23 - AAGGUCCAACCUCACAUGUCC - 43
Evidence experimental
454 [1]
Database links
Predicted targets

Mature dre-miR-2188-3p

Accession MIMAT0011310
Description Danio rerio dre-miR-2188-3p mature miRNA
Sequence 62 - CUGUGUGAGGUUAGACCUAUC - 82
Evidence experimental
454 [1]
Database links

References

  1. PubMed ID: 19397817
    Parallel DNA pyrosequencing unveils new zebrafish microRNAs
    Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA
    BMC Genomics (2009) 10:195