Stem-loop sequence dre-mir-126b

Accession

MI0010848 (change log)

Description

Danio rerio miR-126b stem-loop

Gene family

MIPF0000115; mir-126

Literature search

15 open access papers mention dre-mir-126b
(59 sentences)

Stem-loop

   -----ga  c       cc       u           u       c cuaugc 
5'        gu uuaccgg  ucacggu cauuauuacuu ugguacg g      c
          || |||||||  ||||||| ||||||||||| ||||||| |      a
3'        ca agugguc  aguguca gugauaaugag gccaugc c      c
   aucaaca  -       --       c           u       u aacucu 

Deep sequencing

24406 reads, 945 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr21: 7240227-7240329 [-]
• Overlapping transcripts:

  sense

  ENSDART00000130742 ; egfl7-201; intron 6

Database links

• EntrezGene:mir126b
• EntrezGene:mir126b
• RNAcentral:URS000075C8EA_7955
• miRBase Tracker:MI0010848

Mature sequence dre-miR-126b-5p

• Accession: MIMAT0011307
• Previous IDs: dre-miR-126b*
• Sequence: 23 - cauuauuacuuuugguacgcg - 43
• Deep sequencing: 10226 reads, 10 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00001D69F6_7955

Mature sequence dre-miR-126b-3p

• Accession: MIMAT0011306
• Previous IDs: dre-miR-126b
• Sequence: 60 - ucguaccgugaguaauagugca - 81
• Deep sequencing: 14179 reads, 11 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS000075BF76_7955
• Predicted targets:
  • TargetScanFish:dre-miR-126b

References

1. PMID:19397817 "Parallel DNA pyrosequencing unveils new zebrafish microRNAs" Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA BMC Genomics. 10:195(2009).