miRBase entry: dre-mir-107b

Stem-loop dre-mir-107b


Accession
MI0010843
Description
Danio rerio dre-mir-107b precursor miRNA
Gene family
MIPF0000024; mir-103

Literature search
5 open access papers mention dre-mir-107b
(11 sentences)

Sequence

2349 reads, 92 reads per million, 11 experiments
ucuggccacucugggcuucucuacaguguugccuuguagccuggugaucaAGCAGCAUUGUACAGGGCUUUcagcguguacagaac
((((..(((.(((((((.((.(((((((((((.(((..((...))...)))))))))))))).))))))..))).)))..))))..

Structure
--    gc   u   --    u  c           c   -ua  c 
  ucug  cac cug  ggcu cu uacaguguugc uug   gc  
  ||||  ||| |||  |||| || ||||||||||| |||   || u
  agac  gug gac  UCGG GA AUGUUACGACG Aac   ug  
ca    au   c   UU    -  C           -   uag  g 


Annotation confidence Not enough data
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Genome context
chr17: 23573130-23573215 [+]

Database links

Mature dre-miR-107b

Accession MIMAT0011301
Description Danio rerio dre-miR-107b mature miRNA
Sequence 51 - AGCAGCAUUGUACAGGGCUUU - 71
Evidence experimental
454 [1]
Database links
Predicted targets

References

  1. PubMed ID: 19397817
    Parallel DNA pyrosequencing unveils new zebrafish microRNAs
    Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA
    BMC Genomics (2009) 10:195