Stem-loop sequence dre-mir-1788

AccessionMI0010838 (change log)
DescriptionDanio rerio miR-1788 stem-loop
Gene family MIPF0000792; mir-1788
Literature search

1 open access papers mention dre-mir-1788
(1 sentences)

Stem-loop 
   ucaaccac      --  a   g            a        c a  uc 
5'         ugucuu  gu ucc aggcuuguuuua guugccug g uc  u
           ||||||  || ||| |||||||||||| |||||||| | ||  u
3'         acagag  cg agg ucugaacgaaau cgacggac c ag  a
   acagcaca      ac  g   g            -        u -  ua
Get sequence
Deep sequencing
168 reads, 0 reads per million, 10 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (GRCz11; GCA_000002035.4) Overlapping transcripts
chr9: 11551604-11551704 [-]
sense
OTTDART00000039758 ; fev-001; 5'UTR (exon 1)
ENSDART00000128629 ; fev-001; 5'UTR (exon 1)
Database links

Mature sequence dre-miR-1788-5p

Accession MIMAT0011294
Previous IDsdre-miR-1788
Sequence

23 -  

ggcuuguuuuaaguugccugcg

 - 44

Get sequence
Deep sequencing13 reads, 6 experiments
Evidence experimental; 454 [1]
Predicted targets

Mature sequence dre-miR-1788-3p

Accession MIMAT0011295
Previous IDsdre-miR-1788*
Sequence

59 -  

caggcagcuaaagcaagucug

 - 79

Get sequence
Deep sequencing153 reads, 10 experiments
Evidence experimental; 454 [1]

References

1
PMID:19397817 "Parallel DNA pyrosequencing unveils new zebrafish microRNAs" Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA BMC Genomics. 10:195(2009).