Stem-loop sequence dre-mir-429b

AccessionMI0010836 (change log)
DescriptionDanio rerio miR-429b stem-loop
Gene family MIPF0000019; mir-8
Literature search

11 open access papers mention dre-mir-429b
(43 sentences)

Stem-loop 
   ucuauacu  -ag    a    -c     u   u -          a  -     ug ug 
5'         gc   uaaa uccu  ugauu gug c uuaccaggca gu uuaga  u  a
           ||   |||| ||||  ||||| ||| | |||||||||| || |||||  |  u
3'         cg   guuu aggg  acuaa uac g aaugguccgu ca aaucu  g  a
   --------  cua    a    uc     c   c u          -  u     gu uc
Get sequence
Deep sequencing
29219 reads, 1.43e+03 reads per million, 11 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (GRCz11; GCA_000002035.4) Overlapping transcripts
chr6: 40653129-40653238 [-]
sense
OTTDART00000055115 ; ppil1-001; intron 1
ENSDART00000154359 ; ppil1-001; intron 1
Clustered miRNAs
< 10kb from dre-mir-429b
dre-mir-200cchr6: 40656204-40656288 [-]
dre-mir-141chr6: 40656003-40656085 [-]
dre-mir-429bchr6: 40653129-40653238 [-]
Database links

Mature sequence dre-miR-429b

Accession MIMAT0011291
Sequence

67 -  

uaauacugccugguaaugccau

 - 88

Get sequence
Deep sequencing29197 reads, 11 experiments
Evidence experimental; 454 [1]
Database links
Predicted targets

References

1
PMID:19397817 "Parallel DNA pyrosequencing unveils new zebrafish microRNAs" Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA BMC Genomics. 10:195(2009).