miRBase entry: dre-mir-429b

Stem-loop dre-mir-429b


Accession
MI0010836
Description
Danio rerio dre-mir-429b precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
11 open access papers mention dre-mir-429b
(44 sentences)

Sequence

312 reads, 59 reads per million, 9 experiments
ucuauacugcaguaaaauccucugauuugugucuuaccaggcaaguuuagauguugauacugugucUAAUACUGCCUGGUAAUGCCAUcaaucacugggaauuugaucgc
............((((.((((.(((((.(((.(((((((((((.((((((((((....))...)))))).)))))))))))).).))).)))))..)))).)))).....

Structure
ucuauacugcag    a    -c     u   u -          a  -      ---  u 
            uaaa uccu  ugauu gug c uuaccaggca gu uuagau   gu g
            |||| ||||  ||||| ||| | |||||||||| || ||||||   ||  
            guuu aggg  acuaa UAC G AAUGGUCCGU CA AAUcug   ca a
-------cgcua    a    uc     c   C U          -  U      ugu  u 


Annotation confidence Not enough data
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Genome context
chr6: 40653129-40653238 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-mir-429b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-429b

Accession MIMAT0011291
Description Danio rerio dre-miR-429b mature miRNA
Sequence 67 - UAAUACUGCCUGGUAAUGCCAU - 88
Evidence experimental
454 [1]
Database links
Predicted targets

References

  1. PubMed ID: 19397817
    Parallel DNA pyrosequencing unveils new zebrafish microRNAs
    Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA
    BMC Genomics (2009) 10:195