miRBase entry: gga-mir-2131

Stem-loop gga-mir-2131


Accession
MI0010736
Description
Gallus gallus gga-mir-2131 precursor miRNA
Gene family
MIPF0001631; mir-2131

Literature search
2 open access papers mention gga-mir-2131
(3 sentences)

Sequence

2435 reads, 31 reads per million, 5 experiments
ucucguggcuuccAUGCAGAAGUGCACGGAAACAGCUguuugcuaucgaaaaguuggCUGUUACUGUUCUUCUGAUGGaggcugcugga
(((.(((((((((((.((((((...((((.((((((((...(((.......))))))))))).)))).))))))))))))))))).)))

Structure
   c           G      UGC    A        uuu   au 
ucu guggcuuccAU CAGAAG   ACGG AACAGCUg   gcu  c
||| ||||||||||| ||||||   |||| ||||||||   |||  g
agg cgucggaGGUA GUCUUC   UGUC UUGUCggu   uga  a
   u           -      --U    A        ---   aa 


Annotation confidence High
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Genome context
chrZ: 70743817-70743905 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-2131
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-2131-5p

Accession MIMAT0011207
Description Gallus gallus gga-miR-2131-5p mature miRNA
Sequence 14 - AUGCAGAAGUGCACGGAAACAGCU - 37
Evidence experimental
Illumina [1-2], Northern [1]

Mature gga-miR-2131-3p

Accession MIMAT0026920
Description Gallus gallus gga-miR-2131-3p mature miRNA
Sequence 58 - CUGUUACUGUUCUUCUGAUGG - 78
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19328789
    High throughput sequencing of microRNAs in chicken somites
    "Rathjen T, Pais H, Sweetman D, Moulton V, Munsterberg A, Dalmay T"
    "FEBS Lett (2009) 583:1422-1426

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45