Stem-loop sequence osa-MIR2122

Accession

MI0010711 (change log)

Description

Oryza sativa miR2122 stem-loop

Literature search

2 open access papers mention osa-MIR2122
(4 sentences)

Stem-loop

   uuuc      a   -             a         a                         -cacguca  u           ucgugccaccgugaauagga 
5'     aaaaau acc uuuuguucagcgc aaaucguau gcgcugaacuuagacaccucagcgc        ac ggcgcugaaug                    g
       |||||| ||| ||||||||||||| ||||||||| |||||||||||||||||||||||||        || |||||||||||                    g
3'     uuuuua ugg aaaacaagucgcg uuuaguaua cgugauuugaaucuguggagucgcg        ug cugcgacuuac                    c
   aaau      a   u             g         c                         auuuaucg  -           auguaaccgugcgacugagu 

Deep sequencing

189 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Comments

Huang et al. incorrectly named this sequence miR603 in [1].

Genome context

• Coordinates (MSU7): Chr2: 8715222-8715433 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0010711

Mature sequence osa-miR2122

• Accession: MIMAT0011182
• Sequence: 1 - uuucaaaaauaaccuuuuguuc - 22
• Evidence: experimental; cloned [1]

References

1. PMID:19081140 "Heavy metal-regulated new microRNAs from rice" Huang SQ, Peng J, Qiu CX, Yang ZM J Inorg Biochem. 103:282-287(2009).