miRBase entry: pvu-MIR399a

Stem-loop pvu-MIR399a


Accession
MI0010706
Description
Phaseolus vulgaris pvu-MIR399a precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
8 open access papers mention pvu-MIR399a
(38 sentences)

Sequence

ugcacaagauauuauagucaauaagcaaaccaguuauagggcuucucuuuguuggcaggaaaugacaugaccacuucaugaaauaucuUGCCAAAGGAGAGUUGCCCUGuugcugcuuuagcuuaauauguaaucuucuaugcuauucagugcauaugaucauucacuccauugaagagaagcacugaaguaguaugcaagggaucaaacaaaugacuucauc
.......(((......))).....(((.((.(.((.(((.(((((((((((.(((.((..((((((((((.....)))))..............((((((.((((..(((((..((....)).))))).))))))))))((((........))))....)))))..))))).))))))))))).))))).).)).)))..(((.(((......))).)))...

Structure
-ugcacaagauauuauagucaauaa   a  c g  a   g           u   c  ga     caugaccacuucaugaaauaucuUGCCAA      G    CC     cu  u 
                         gca ac a uu uag gcuucucuuug ugg ag  aauga                             AGGAGA UUGC  UGuug  gc u
                         ||| || | || ||| ||||||||||| ||| ||  |||||                             |||||| ||||  |||||  ||  
                         cgu ug u aa guc cgaagagaagu acc uc  uuacu                             ucuucu aaug  auaau  cg u
cuacuucaguaaacaaacuagggaa   a  a g  -   a           u   -  ac     ---------aguauacgugacuuaucgua      -    -u     -u  a 


Annotation confidence Not enough data
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Genome context
chr7: 5883859-5884081 [-]

Database links

Mature pvu-miR399a

Accession MIMAT0011177
Description Phaseolus vulgaris pvu-miR399a mature miRNA
Sequence 89 - UGCCAAAGGAGAGUUGCCCUG - 109
Evidence experimental
cloned [1], Northern [1]

References

  1. PubMed ID: 19353277
    Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress
    "Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL"
    "Plant Mol Biol (2009) 70:385-401