miRBase entry: mtr-MIR2119

Stem-loop mtr-MIR2119


Accession
MI0010698
Description
Medicago truncatula mtr-MIR2119 precursor miRNA
Gene family
MIPF0000762; MIR2119


Sequence

uuuauuuuuuuuacacuaagauacucccuacuuuccuuugauuggaaauaaagagagacaaaaagguaaauuuaauuucucuucuuaugucaaUCAAAGGGAGGUGUGGAGUAGagguguaaaaaguaaa
......(((((((((((....((((((.(((((((((((((((((..((((.((((((...(((......)))....)))))).)))).))))))))))))))))).))))))..)))))))))))....

Structure
uuuauu           aaga      c                 aa    a      -caa   gg 
      uuuuuuacacu    uacucc uacuuuccuuugauugg  auaa gagaga    aaa  u
      |||||||||||    |||||| |||||||||||||||||  |||| ||||||    |||   
      gaaaaaugugg    AUGAGG GUGGAGGGAAACUaacu  uauu uucucu    uuu  a
--aaau           --aG      U                 -g    c      uuaa   aa 


Annotation confidence Not enough data
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Genome context
chr5: 18765366-18765495 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2119
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2119

Accession MIMAT0011168
Description Medicago truncatula mtr-miR2119 mature miRNA
Sequence 94 - UCAAAGGGAGGUGUGGAGUAG - 114
Evidence experimental
454 [2-3], Northern [2]

References

  1. PubMed ID: 19555436
    Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
    "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
    "New Phytol (2009) 184:85-98

  2. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796

  3. PubMed ID: 19353277
    Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress
    "Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL"
    "Plant Mol Biol (2009) 70:385-401