Stem-loop ssc-mir-503

Accession

MI0010684

Description

Sus scrofa ssc-mir-503 precursor miRNA

Gene family

MIPF0000183; mir-503

Literature search

2 open access papers mention ssc-mir-503
(3 sentences)

Sequence

65 reads, 48 reads per million, 10 experiments

gccccgcacucagccgugcccUAGCAGCGGGAACAGUACUGCAGugggcgaucgguacucugggguauuguuucugcugcccgggcaaggcugggacucccgccggggc
(((((((.(((((((.(((((..(((((((((((((((((.(((.(.((.....)).).))).)))))))))))))))))..))))).)))))))......).))))))

Structure

      - -----a       g     UA                 G   u g  g 
gccccg c      cucagcc ugccc  GCAGCGGGAACAGUACU CAG g gc a
|||||| |      ||||||| |||||  ||||||||||||||||| ||| | || u
cggggc g      gggucgg acggg  cgucgucuuuguuaugg guc c ug c
      c cccuca       a     cc                 g   u a  g 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssc-miR-503

• Accession: MIMAT0010189
• Description: Sus scrofa ssc-miR-503 mature miRNA
• Sequence: 22 - UAGCAGCGGGAACAGUACUGCAG - 44
• Evidence: experimental ; 454 [1], Illumina [2-3]

References

1. PubMed ID: 19196471
   Cloning, characterization and expression analysis of porcine microRNAs
   Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
   BMC Genomics (2009) 10:65


2. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328