miRBase entry: sma-mir-71a

Stem-loop sma-mir-71a


Accession
MI0010674
Description
Schistosoma mansoni sma-mir-71a precursor miRNA
Gene family
MIPF0000278; mir-71

Literature search
8 open access papers mention sma-mir-71a
(30 sentences)

Sequence

ugugauacuagugcugUGAAAGACGAUGGUAGUGAGAugccgauugcaUCUCGCUUCCCCGCCUUUCCCGguaagaaucacg
.(((((.((..(((((.(((((.((..((.((((((((((.....)))))))))).)).)).))))).))))))).))))).

Structure
u     a  ag     U     A  AU  U          c 
 gugau cu  ugcug GAAAG CG  GG AGUGAGAugc g
 ||||| ||  ||||| ||||| ||  || |||||||||| a
 cacua ga  augGC CUUUC GC  CC UCGCUCUacg u
g     a  --     C     C  -C  U          u 


Annotation confidence Not enough data
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Genome context
Chr_W: 22875654-22875735 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from sma-mir-71a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sma-miR-71a-5p

Accession MIMAT0010181
Description Schistosoma mansoni sma-miR-71a-5p mature miRNA
Sequence 17 - UGAAAGACGAUGGUAGUGAGA - 37
Evidence experimental
Illumina [2], SOLiD [2]

Mature sma-miR-71a-3p

Accession MIMAT0032103
Description Schistosoma mansoni sma-miR-71a-3p mature miRNA
Sequence 49 - UCUCGCUUCCCCGCCUUUCCCG - 70
Evidence experimental
Illumina [2], SOLiD [2]

References

  1. PubMed ID: 19107204
    Identification and characterization of novel microRNAs from Schistosoma japonicum
    Xue X, Sun J, Zhang Q, Wang Z, Huang Y, Pan W
    PLoS One (2008) 3:e4034

  2. PubMed ID: 24069470
    Sex-biased expression of microRNAs in Schistosoma mansoni
    Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
    PLoS Negl Trop Dis (2013) 7:e2402