miRBase entry: sma-let-7

Stem-loop sma-let-7


Accession
MI0010673
Description
Schistosoma mansoni sma-let-7 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
8 open access papers mention sma-let-7
(17 sentences)

Sequence

ugGGAGGUAGUUCGUUGUGUGGUuugcuugucaaaaugauuaaaagacCAUACAACCGACUGGCUUUCCCAUu
((((((.(((((.((((((((((((....((((...))))....)))))))))))).))))).)..)))))..

Structure
--     -- G     C            gcuu    a 
  ugGGA  G UAGUU GUUGUGUGGUuu    guca  
  |||||  | ||||| ||||||||||||    |||| a
  ACCCU  C GUCAG CAACAUACcaga    uagu  
uU     UU G     C            aaau    a 


Annotation confidence Not enough data
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Genome context
Chr_7: 5118791-5118863 [+]

Database links

Mature sma-let-7-5p

Accession MIMAT0010180
Description Schistosoma mansoni sma-let-7-5p mature miRNA
Sequence 3 - GGAGGUAGUUCGUUGUGUGGU - 23
Evidence experimental
Illumina [2], SOLiD [2]

Mature sma-let-7-3p

Accession MIMAT0032102
Description Schistosoma mansoni sma-let-7-3p mature miRNA
Sequence 49 - CAUACAACCGACUGGCUUUCCCAU - 72
Evidence experimental
Illumina [2], SOLiD [2]

References

  1. PubMed ID: 19107204
    Identification and characterization of novel microRNAs from Schistosoma japonicum
    Xue X, Sun J, Zhang Q, Wang Z, Huang Y, Pan W
    PLoS One (2008) 3:e4034

  2. PubMed ID: 24069470
    Sex-biased expression of microRNAs in Schistosoma mansoni
    Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
    PLoS Negl Trop Dis (2013) 7:e2402