miRBase entry: bra-MIR172a

Stem-loop bra-MIR172a


Accession
MI0010661
Description
Brassica rapa bra-MIR172a precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
14 open access papers mention bra-MIR172a
(58 sentences)

Sequence

cguuuuuuguaggcgcagcaccaucaagauucacauggaaauugaaaaaucuccuaauuuuuaauuaggguuuugauauguauaugAGAAUCUUGAUGAUGCUGCAUcaacaaccgacg
((((..((((.((.((((((.(((((((((((.((((...((...(((((..(((((((...))))))))))))...))...)))).))))))))))).)))))).)).))))..))))

Structure
    uu    a  c      c           a    gaa  uga     cu       u 
cguu  uugu gg gcagca caucaagauuc caug   au   aaaau  ccuaauu  
||||  |||| || |||||| ||||||||||| ||||   ||   |||||  ||||||| u
gcag  aaca cU CGUCGU GUAGUUCUAAG guau   ua   uuuug  ggauuaa  
    cc    a  A      A           A    aug  uag     --       u 


Annotation confidence Not enough data
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Genome context
chrA2: 2013332-2013450 [-]

Database links

Mature bra-miR172a

Accession MIMAT0010166
Description Brassica rapa bra-miR172a mature miRNA
Sequence 87 - AGAAUCUUGAUGAUGCUGCAU - 107
Evidence experimental
cloned [1], Northern [1]

References

  1. PubMed ID: 18558089
    Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
    "He XF, Fang YY, Feng L, Guo HS"
    "FEBS Lett (2008) 582:2445-2452

  2. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146