Stem-loop sequence ath-MIR2111a

Accession

MI0010630 (change log)

Description

Arabidopsis thaliana miR2111a stem-loop

Gene family

MIPF0000754; MIR2111

Literature search

4 open access papers mention ath-MIR2111a
(12 sentences)

Stem-loop

      ug   a      ---        c                    u     gcuuaauuuacgcaggaaauuuguaua 
5' cga  aug guauug   gugaggac ggguaaucugcauccugagg uuaaa                           c
   |||  ||| ||||||   |||||||| |||||||||||||||||||| |||||                            
3' gcu  ugc cauaac   cauucuug uccauuaggcguagggcucc gauuu                           g
      ca   a      auu        c                    u     uccauaugauuauguguaugcauauac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr3: 2854284-2854442 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0010630

Mature sequence ath-miR2111a-5p

• Accession: MIMAT0011150
• Previous IDs: ath-miR2111a
• Sequence: 28 - uaaucugcauccugagguuua - 48
• Evidence: experimental; Illumina [1-3]

Mature sequence ath-miR2111a-3p

• Accession: MIMAT0011151
• Previous IDs: ath-miR2111a*
• Sequence: 111 - guccucgggaugcggauuacc - 131
• Evidence: experimental; Illumina [1-3]

References

1. PMID:19307293 "Computational and analytical framework for small RNA profiling by high-throughput sequencing" Fahlgren N, Sullivan CM, Kasschau KD, Chapman EJ, Cumbie JS, Montgomery TA, Gilbert SD, Dasenko M, Backman TW, Givan SA, Carrington JC RNA. 15:992-1002(2009).
2. PMID:19465578 "Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing" Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR Plant Physiol. 150:1541-1555(2009).
3. PMID:19854858 "Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing" Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ Plant Physiol. 151:2120-2132(2009).