Stem-loop sequence bmo-mir-993a

Accession

MI0010626 (change log)

Description

Bombyx mori miR-993a stem loop

Gene family

MIPF0000033; mir-10

Literature search

1 open access papers mention bmo-mir-993a
(4 sentences)

Stem-loop

   ggca  uu     uc    c      uc          uagauu 
5'     ca  cguga  uacc uguaga  cgggcuuuug      a
       ||  |||||  |||| ||||||  ||||||||||       
3'     gu  gcacu  augg acaucu  gcucgaagac      a
   -aag  cg     cu    -      cu          uacauu 

Deep sequencing

476 reads, 33.3 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: NW_004582018.1: 2433576-2433663 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0010626

Mature sequence bmo-miR-993a-5p

• Accession: MIMAT0015298
• Previous IDs: bmo-miR-993a*
• Sequence: 14 - ucuacccuguagauccgggcuuuu - 37
• Deep sequencing: 449 reads, 3 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00005CE8ED_7091

Mature sequence bmo-miR-993a-3p

• Accession: MIMAT0010129
• Previous IDs: bmo-miR-993a
• Sequence: 55 - gaagcucgucucuacagguaucu - 77
• Deep sequencing: 27 reads, 2 experiments
• Evidence: experimental; Illumina [2]

References

1. " Griffiths-Jones S Unpublished (2009).
2. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).