Stem-loop sequence tca-bantam

Accession

MI0010584 (change log)

Description

Tribolium castaneum bantam stem loop

Gene family

MIPF0000153; bantam

Literature search

2 open access papers mention tca-bantam
(4 sentences)

Stem-loop

   ucagc   a     cu                 ga    uaua 
5'      gag cgaaa  gguuuucacagugauuu  caga    u
        ||| |||||  |||||||||||||||||  ||||     
3'      cuu guuuu  ucgaaaguguuacuaga  gucu    u
   ----a   -     ag                 --    uagu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: ChLG3: 17668731-17668811 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Bantam
• miRBase Tracker:MI0010584

Mature sequence tca-bantam-5p

• Accession: MIMAT0019178
• Sequence: 15 - cugguuuucacagugauuugacag - 38
• Evidence: experimental; SOLID [1]
• Database links:
  • RNAcentral:URS00000D37F3_7070

Mature sequence tca-bantam-3p

• Accession: MIMAT0010091
• Previous IDs: tca-bantam
• Sequence: 52 - ugagaucauugugaaagcugauu - 74
• Evidence: experimental; SOLID [1]
• Database links:
  • RNAcentral:URS00006116AC_7070

References

1. " Griffiths-Jones S Unpublished (2009).
2. PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).