miRBase entry: zma-MIR396c

Stem-loop zma-MIR396c


Accession
MI0010569
Description
Zea mays zma-MIR396c precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
22 open access papers mention zma-MIR396c
(85 sentences)

Sequence

4209 reads, 8272 reads per million, 112 experiments
cgggcaugcuUUCCACAGGCUUUCUUGAACUGugaacucgugggugguggugguaugucggauggaaugcuugg
(((((((.((.((((((.(((.((....(((.((....))..)))...)).))).))).))).)).))))))).

Structure
-       g  U   -   G   U  UUGA   -G  a 
 cgggcau cu UCC ACA GCU UC    ACU  ug a
 ||||||| || ||| ||| ||| ||    |||  ||  
 guucgua gg agg ugu ugg gg    ugg  gc c
g       a  u   c   a   u  -ugg   gu  u 


Annotation confidence Not enough data
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Genome context
chr2: 1951700-1951773 [-]

Database links

Mature zma-miR396c

Accession MIMAT0010076
Description Zea mays zma-miR396c mature miRNA
Sequence 11 - UUCCACAGGCUUUCUUGAACUG - 32
Evidence experimental
Illumina [1-2]
Database links

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. PubMed ID: 19103661
    Characterization and expression profiles of miRNAs in rice seeds
    "Xue LJ, Zhang JJ, Xue HW"
    "Nucleic Acids Res (2009) 37:916-930