miRBase entry: osa-MIR2097

Stem-loop osa-MIR2097


Accession
MI0010557
Description
Oryza sativa osa-MIR2097 precursor miRNA


Sequence

3 reads, 3 reads per million, 2 experiments
guggggaAGAGAUGGGACGGGCAGGGAAGgaaguagauggauagaguuuggggauaggagggaaggggauagauuugguuguuuuucggaaaaaaaaaaaccuuguguuuuucauguuuacagugcugccccuaagagcagaauuUUCUCUUCUUCGUGUCGCAUUUcuuuaaaagc
.....(((((((((.((((.(.((((((((((((...((.......(((((((.(((.(..(((.(.((.((((..((((.(((((......))))).))))....)))).)).).)))....).))).)))))))..))..))))))).)))))).)))).)))))))))......

Structure
-guggg         G    G C     -       aga  gauagag       a   g --gg   g g  u    --uu    g     cg 
      gaAGAGAUG GACG G AGGGA AGgaagu   ug       uuugggg uag a    gaa g ga agau    gguu uuuuu  g
      ||||||||| |||| | ||||| |||||||   ||       ||||||| ||| |    ||| | || ||||    |||| |||||   
      uuucUUUAC CUGU C UUCUU UCUUuua   ac       gaauccc guc u    uuu u cu uuug    ccaa aaaaa  a
cgaaaa         G    G -     C       -ag  -----ga       c   g gaca   g a  u    uguu    a     aa 


Annotation confidence Not enough data
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Genome context
Chr1: 9055603-9055779 [+]

Database links

Mature osa-miR2097-5p

Accession MIMAT0010058
Description Oryza sativa osa-miR2097-5p mature miRNA
Sequence 8 - AGAGAUGGGACGGGCAGGGAAG - 29
Evidence experimental
Illumina [1]
Database links

Mature osa-miR2097-3p

Accession MIMAT0010059
Description Oryza sativa osa-miR2097-3p mature miRNA
Sequence 146 - UUCUCUUCUUCGUGUCGCAUUU - 167
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19103661
    Characterization and expression profiles of miRNAs in rice seeds
    "Xue LJ, Zhang JJ, Xue HW"
    "Nucleic Acids Res (2009) 37:916-930