miRBase entry: mtr-MIR1509a

Stem-loop mtr-MIR1509a


Accession
MI0010543
Description
Medicago truncatula mtr-MIR1509a precursor miRNA
Gene family
MIPF0000771; MIR1509

Literature search
2 open access papers mention mtr-MIR1509a
(4 sentences)

Sequence

cccggccucucucuugccucauagcuaguuaggguuuucguugcugucucguguuuucuuuugauccauucaauuuuuUUAAUCUAGGAAAAUACGGUGgagaggguuuuucuuuuuauuguuugagauugauaucucucgucuucucuACCGGAUUUCCUUGAUUAAAGaaauuuacugguucauuauuauuuuuuagcuaugaugacaauguguaucccagcucauuaugaggccuuuuuguaaggucuggg
((((((((..(....(((((((((..((((.((((...(((...(((((((((((......(((.(((...(((((((((((((.((((((...((((((((((((..................(((((....)))))...))))))))))))..)))))).)))))))))))))...))).)))............))).)))).)))))))...)))).))))..)))))))))......)..))).)))))

Structure
     -   cu --ucuu         cu    a    uuu   ugc    -    -   ------uucuuu   u   uuc             U      AUA            uuuuucuuuuuauuguuu     u 
cccgg ccu  c      gccucauag  aguu gggu   cgu   uguc ucgu guu            uga cca   aauuuuuUUAAUC AGGAAA   CGGUGgagaggg                  gagau g
||||| |||  |      |||||||||  |||| ||||   |||   |||| |||| |||            ||| |||   ||||||||||||| ||||||   ||||||||||||                  |||||  
ggguc gga  g      cggaguauu  ucga ccua   gua   acag agua cga            acu ggu   uuaaaGAAAUUAG UCCUUU   GCCAucucuucu                  cucua a
     u   au uuuuuc         ac    c    ugu   ---    u    u   uuuuuuauuauu   u   cau             U      -AG            ---------------gcu     u 


Annotation confidence Not enough data
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Genome context
chr7: 36253579-36253832 [+]

Database links

Mature mtr-miR1509a-5p

Accession MIMAT0010034
Description Medicago truncatula mtr-miR1509a-5p mature miRNA
Sequence 79 - UUAAUCUAGGAAAAUACGGUG - 99
Evidence experimental
Illumina [1-2], Northern [1]

Mature mtr-miR1509a-3p

Accession MIMAT0010035
Description Medicago truncatula mtr-miR1509a-3p mature miRNA
Sequence 150 - ACCGGAUUUCCUUGAUUAAAG - 170
Evidence experimental
Illumina [1], Northern [1]

References

  1. PubMed ID: 19068109
    High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families
    Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T
    BMC Genomics (2008) 9:593

  2. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553