miRBase entry: bfl-mir-33-1

Stem-loop bfl-mir-33-1


Accession
MI0010525
Description
Branchiostoma floridae bfl-mir-33-1 precursor miRNA
Gene family
MIPF0000070; mir-33


Sequence

gcugagGUGCAUUGUAGUUGCAUUGCAUgugcacaaaggaagugcaauguaacagcagugcagcucagacaugguugcaaug
.(((((.((((((((.((((((((((((.(.(.....).).)))))))))))).)))))))).)))))..............

Structure
-------------g     G        A            g g a 
              cugag UGCAUUGU GUUGCAUUGCAU u c c
              ||||| |||||||| |||||||||||| | | a
              gacuc acgugacg caauguaacgug a g a
guaacguugguaca     g        a            a g a 


Annotation confidence Not enough data
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Genome context
GG666471.1: 4947531-4947612 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bfl-mir-33-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bfl-miR-33

Accession MIMAT0009474
Description Branchiostoma floridae bfl-miR-33 mature miRNA
Sequence 7 - GUGCAUUGUAGUUGCAUUGCAU - 28
Evidence experimental
454 [1], cloned [2]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68

  2. PubMed ID: 19196332
    Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution
    "Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L"
    "Evol Dev (2009) 11:41-49