miRBase entry: bfl-mir-92a-3

Stem-loop bfl-mir-92a-3


Accession
MI0010523
Description
Branchiostoma floridae bfl-mir-92a-3 precursor miRNA
Gene family
MIPF0000013; mir-25


Sequence

agaacauugcccugacaagaaggucgugauagguggcaauguuguacccacacaaaUAUUGCACUUGUCCCGGCCUUUuugc
...............(((((((((((.((((((((.(((((((((......)).))))))))))))))).))))))))))).

Structure
agaacauugcccuga           u        g       -  ac 
               caagaaggucg gauaggug caauguu gu  c
               ||||||||||| |||||||| ||||||| ||   
               guuUUUCCGGC CUGUUCAC GUUAUaa ca  c
--------------c           C        -       a  ca 


Annotation confidence Not enough data
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Genome context
GG666632.1: 776303-776384 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bfl-mir-92a-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bfl-miR-92a

Accession MIMAT0009478
Description Branchiostoma floridae bfl-miR-92a mature miRNA
Sequence 57 - UAUUGCACUUGUCCCGGCCUUU - 78
Evidence experimental
454 [1], cloned [2]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68

  2. PubMed ID: 19196332
    Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution
    "Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L"
    "Evol Dev (2009) 11:41-49