miRBase entry: bfl-mir-125b

Stem-loop bfl-mir-125b


Accession
MI0010518
Description
Branchiostoma floridae bfl-mir-125b precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

guggagggcguaugucacccagcucccaagauccuaaccugugagccauggacaUCACAAGUUAGGGUCUCAGGGAaugggg
......(((....))).((((..((((.((((((((((.(((((..........))))).))))))))))..)))).)))).

Structure
guggagggcguauguca    gc    -a          c     gcca 
                 ccca  uccc  agauccuaac uguga    u
                 ||||  ||||  |||||||||| |||||     
                 gggu  AGGG  UCUGGGAUUG ACACU    g
----------------g    -a    AC          A     acag 


Annotation confidence Not enough data
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Genome context
GG666478.1: 2707563-2707644 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from bfl-mir-125b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bfl-miR-125b

Accession MIMAT0010007
Description Branchiostoma floridae bfl-miR-125b mature miRNA
Sequence 55 - UCACAAGUUAGGGUCUCAGGGA - 76
Evidence experimental
cloned [1]

References

  1. PubMed ID: 19196332
    Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution
    "Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L"
    "Evol Dev (2009) 11:41-49