Stem-loop sequence bfl-mir-135a-2

Accession

MI0010502 (change log)

Description

Branchiostoma floridae miR-135a-2 stem-loop

Gene family

MIPF0000028; mir-135

Stem-loop

   -------------  g    a           cu          uau 
5'              gu uucu uggcuuucauc  augugaaugu   c
                || |||| |||||||||||  ||||||||||    
3'              ca aaga acugaaggugg  uacacuugua   g
   ucaaaggugugug  g    a           -u          cac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JGI2; GCF_000003815.1): GG666574.1: 3848762-3848843 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bfl-mir-135a-2

• bfl-mir-135b-2: GG666574.1: 3848991-3849062 [-]
• bfl-mir-135a-2: GG666574.1: 3848762-3848843 [-]
• bfl-mir-135b-1: GG666574.1: 3847619-3847690 [-]
• bfl-mir-135a-1: GG666574.1: 3847395-3847476 [-]

Database links

• miRBase Tracker:MI0010502

Mature sequence bfl-miR-135a

• Accession: MIMAT0009992
• Sequence: 7 - uauggcuuucauccuaugugaa - 28
• Evidence: experimental; cloned [1], 454 [2]

References

1. PMID:19196332 "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution" Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L Evol Dev. 11:41-49(2009).
2. PMID:19196333 "The deep evolution of metazoan microRNAs" Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ Evol Dev. 11:50-68(2009).