miRBase entry: bfl-mir-135a-1

Stem-loop bfl-mir-135a-1


Accession
MI0010501
Description
Branchiostoma floridae bfl-mir-135a-1 precursor miRNA
Gene family
MIPF0000028; mir-135


Sequence

guguucUAUGGCUUUCAUCCUAUGUGAAuguuaucgcacauguucacauugguggaagucaaagaagacguguguggaaacu
((.((((.(((((((((((..((((((((((........)))))))))).))))))))))).)))).)).............

Structure
-------------  g    A           CU          uau 
             gu uucU UGGCUUUCAUC  AUGUGAAugu   c
             || |||| |||||||||||  ||||||||||    
             ca aaga acugaaggugg  uacacuugua   g
ucaaaggugugug  g    a           -u          cac 


Annotation confidence Not enough data
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Genome context
GG666574.1: 3847395-3847476 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from bfl-mir-135a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bfl-miR-135a

Accession MIMAT0009992
Description Branchiostoma floridae bfl-miR-135a mature miRNA
Sequence 7 - UAUGGCUUUCAUCCUAUGUGAA - 28
Evidence experimental
cloned [1], 454 [2]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68

  2. PubMed ID: 19196332
    Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution
    "Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L"
    "Evol Dev (2009) 11:41-49