Stem-loop sequence bta-mir-1185

AccessionMI0010478 (change log)
DescriptionBos taurus miR-1185 stem-loop
Gene family MIPF0000018; mir-154
Literature search

2 open access papers mention bta-mir-1185
(2 sentences)

Stem-loop 
   u       u    -     ga a              a  uua 
5'  uugguac ugaa gagag  u cccuuuguauguuc cu   u
    ||||||| |||| |||||  | |||||||||||||| ||    
3'  aacuaug guuu uucuc  a gggagacauauaag gg   u
   a       c    a     ag -              c  uaa
Get sequence
Deep sequencing
861 reads, 0 reads per million, 62 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Btau_5.0.1; GCA_000003205.6) Overlapping transcripts
chr21: 67859743-67859828 [+]
intergenic
Clustered miRNAs
< 10kb from bta-mir-1185
bta-mir-543chr21: 67850198-67850277 [+]
bta-mir-495chr21: 67851608-67851688 [+]
bta-mir-154cchr21: 67853625-67853699 [+]
bta-mir-376echr21: 67856314-67856395 [+]
bta-mir-376cchr21: 67856685-67856770 [+]
bta-mir-376dchr21: 67857059-67857140 [+]
bta-mir-654chr21: 67857212-67857292 [+]
bta-mir-376bchr21: 67857435-67857527 [+]
bta-mir-376achr21: 67857794-67857892 [+]
bta-mir-1185chr21: 67859743-67859828 [+]
bta-mir-3956chr21: 67860482-67860579 [+]
bta-mir-381chr21: 67861446-67861520 [+]
bta-mir-487bchr21: 67861931-67862014 [+]
bta-mir-539chr21: 67862745-67862822 [+]
bta-mir-544achr21: 67864731-67864821 [+]
bta-mir-655chr21: 67865688-67865784 [+]
bta-mir-411cchr21: 67867851-67867924 [+]
bta-mir-487achr21: 67868237-67868316 [+]
Database links

Mature sequence bta-miR-1185

Accession MIMAT0009973
Sequence

15 -  

agaggauacccuuuguauguu

 - 35

Get sequence
Deep sequencing588 reads, 62 experiments
Evidence experimental; cloned [2]
Predicted targets

References

1
PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
2
PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).