miRBase entry: bta-mir-1307

Stem-loop bta-mir-1307


Accession
MI0010474
Description
Bos taurus bta-mir-1307 precursor miRNA
Gene family
MIPF0000558; mir-1307

Literature search
2 open access papers mention bta-mir-1307
(3 sentences)

Sequence

42614 reads, 593 reads per million, 77 experiments
caucaagagucggcugagucacugccacugccuaccaaucucgaccggaccucgaccggcucgucuauauugccaaucgACUCGGCGUGGCGUCGGUCGUGguagauaggcggucauacagacgaguuuucaaguguugcucuggugac
(((((.((((..(((((.((.(((..((((((((.(.(((.(((((((.((.((.((((.(((..............))).)))))).))..))))))).))).).))))))))....)))..)).))....)))...)))))))))..

Structure
--     a    -cg   ----  g  -a   --cc        c a   u       -a  u  a    c   ucuaua 
  cauca gagu   gcu    ga uc  cug    acugccua c auc cgaccgg  cc cg ccgg ucg      u
  ||||| ||||   |||    || ||  |||    |||||||| | ||| |||||||  || || |||| |||       
  guggu cucg   uga    uu ag  gac    uggcggau g ugG GCUGGCU  GG GC GGCU Agc      u
ca     -    uug   acuu  g  ca   auac        a a   U       GC  U  -    C   uaaccg 


Annotation confidence High
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Genome context
chr26: 24356476-24356624 [-]

Database links

Mature bta-miR-1307

Accession MIMAT0009969
Description Bos taurus bta-miR-1307 mature miRNA
Sequence 80 - ACUCGGCGUGGCGUCGGUCGUG - 101
Evidence not_experimental

References

  1. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125