Stem-loop sequence bta-mir-7-1

AccessionMI0010471 (change log)
DescriptionBos taurus miR-7-1 stem-loop
Gene family MIPF0000022; mir-7
Literature search

9 open access papers mention bta-mir-7-1
(19 sentences)

Stem-loop 
   -    agca      c    c   a     a u     u       ucuc 
5'  gugg    gccagc ccau ugg agacu g gauuu guuguug    c
    ||||    |||||| |||| ||| ||||| | ||||| |||||||    u
3'  cgcc    cggucg ggua gcc ucuga c cugaa caacaac    g
   a    --ac      u    c   g     c -     -       ucgc
Get sequence
Deep sequencing
4924 reads, 12.1 reads per million, 66 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Btau_5.0.1; GCA_000003205.6) Overlapping transcripts
chr21: 20048987-20049084 [+]
intergenic
Clustered miRNAs
< 10kb from bta-mir-7-1
bta-mir-1179chr21: 20044885-20044974 [+]
bta-mir-7-1chr21: 20048987-20049084 [+]
Database links

Mature sequence bta-miR-7

Accession MIMAT0003843
Sequence

21 -  

uggaagacuagugauuuuguuguu

 - 44

Get sequence
Deep sequencing14706 reads, 66 experiments
Evidence experimental; cloned [2]
Predicted targets

References

1
PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
2
PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).