Stem-loop sequence bta-mir-29e

Accession

MI0010454 (change log)

Description

Bos taurus miR-29e stem-loop

Gene family

MIPF0000009; mir-29

Literature search

23 open access papers mention bta-mir-29e
(77 sentences)

Stem-loop

            -          c      g  u    uuuucc 
5' cuucuggaa gcugguuuca auggug cu agau      a
   ||||||||| |||||||||| |||||| || ||||       
3' gaggauuuu ugacuaaagu uacuac ga ucua      u
            g          u      -  -    uguuuc 

Deep sequencing

5155 reads, 68.9 reads per million, 74 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr16: 77815740-77815820 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-29e

• bta-mir-29e: chr16: 77815740-77815820 [+]
• bta-mir-29d: chr16: 77816279-77816366 [+]

Database links

• EntrezGene:MIR29E
• miRBase Tracker:MI0010454

Mature sequence bta-miR-29e

• Accession: MIMAT0009953
• Sequence: 52 - uagcaucauuugaaaucaguguuu - 75
• Deep sequencing: 5093 reads, 74 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetScanVert:bta-miR-29e

References

1. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).