miRBase entry: cfa-mir-300

Stem-loop cfa-mir-300

Accession

MI0010428

Description

Canis familiaris cfa-mir-300 precursor miRNA

Gene family

MIPF0000018; mir-154

Sequence

gcuacUUGAAGAGAGGUUAUCCUUCGUguguuuguaugauuguaaugaauaugcaaggacaagcucucuccgaggagc
(((.((((.((((((.((.(((((.((((((((((.........))))))))))))))).)).)))))).)))).)))

Structure

   a    A      G  A     C          aug 
gcu cUUG AGAGAG UU UCCUU GUguguuugu   a
||| |||| |||||| || ||||| ||||||||||   u
cga gagc ucucuc aa aggaa cguauaagua   u
   g    c      g  c     -          aug

Annotation confidence Not enough data

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Genome context

chr8: 69271815-69271892 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from cfa-mir-300

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-300

Accession	MIMAT0009929
Description	Canis familiaris cfa-miR-300 mature miRNA
Sequence	6 - UUGAAGAGAGGUUAUCCUUCGU - 27
Evidence	not_experimental

References

PubMed ID: 18215311
miRNAminer: a tool for homologous microRNA gene search
"Artzi S, Kiezun A, Shomron N"
"BMC Bioinformatics (2008) 9:39