miRBase entry: cfa-mir-188

Stem-loop cfa-mir-188


Accession
MI0010379
Description
Canis familiaris cfa-mir-188 precursor miRNA
Gene family
MIPF0000113; mir-188


Sequence

ugcucccucucucaCAUCCCUUGCAUGGUGGAGGGUgagcuuuuugaaaaccccucccacaugcaggguuugcaggauggugagcc
.((((((..(((..((..(((((((((..((((((....(.....).....))))))..)))))))))..))..))).)).)))).

Structure
u    -  uc   ca  UC         GU      -Ugag u 
 gcuc cc  ucu  CA  CCUUGCAUG  GGAGGG     c u
 |||| ||  |||  ||  |||||||||  ||||||     | u
 cgag gg  agg  gu  gggacguac  ccuccc     g u
c    u  -u   ac  uu         ac      caaaa u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrX: 42775058-42775143 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from cfa-mir-188
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-188

Accession MIMAT0009880
Description Canis familiaris cfa-miR-188 mature miRNA
Sequence 15 - CAUCCCUUGCAUGGUGGAGGGU - 36
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39