Stem-loop spu-mir-2005

Accession

MI0010275

Description

Strongylocentrotus purpuratus spu-mir-2005 precursor miRNA

Gene family

MIPF0001956; mir-2005

Literature search

1 open access papers mention spu-mir-2005
(1 sentences)

Sequence

cuacuugucaaucuuuggugcAGUCCAAUAGGGAGGGCAUUGCAGgugauauuugaaagcccugcaguggcuccuauuggucauuaccagaugauugacauc
.....(((((((((((((((..(.((((((((..((.(((((((((.(...........)))))))))).)))))))))).)..))))))).))))))))..

Structure

cuacu        -       cA U        GA  G         u auau 
     ugucaauc uuuggug  G CCAAUAGG  GG CAUUGCAGg g    u
     |||||||| |||||||  | ||||||||  || ||||||||| |    u
     acaguuag agaccau  c gguuaucc  uc gugacgucc c    g
---cu        u       ua u        --  g         - gaaa 

Annotation confidence Not enough data

Genome context

KN913462.1: 124766-124867 [+]

Mature spu-miR-2005

• Accession: MIMAT0009746
• Description: Strongylocentrotus purpuratus spu-miR-2005 mature miRNA
• Sequence: 22 - AGUCCAAUAGGGAGGGCAUUGCAG - 45
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68