Stem-loop sequence spu-mir-2003

Accession

MI0010273 (change log)

Description

Strongylocentrotus purpuratus miR-2003 stem-loop

Gene family

MIPF0002049; mir-2003

Stem-loop

   ---g   gu       -a     u    u u         ---c  ga 
5'     cug  uggccua  acccg aagg c uaacuugug    ug  g
       |||  |||||||  ||||| |||| | |||||||||    ||   
3'     gac  gccggau  ugggu uucc g auuggacac    ac  u
   auaa   ag       ga     -    c u         auga  au 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Spur_4.2; GCA_000002235.3): KN914398.1: 1117967-1118056 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir2003
• RNAcentral:URS0000759F8A_7668
• miRBase Tracker:MI0010273

Mature sequence spu-miR-2003-5p

• Accession: MIMAT0009744
• Previous IDs: spu-miR-2003
• Sequence: 14 - aacccguaaggucuuaacuugug - 36
• Evidence: experimental; 454 [1]

Mature sequence spu-miR-2003-3p

• Accession: MIMAT0019166
• Previous IDs: spu-miR-2003*
• Sequence: 54 - cagguuaugcccuuuggguagua - 76
• Evidence: experimental; 454 [2]

References

1. PMID:19196333 "The deep evolution of metazoan microRNAs" Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ Evol Dev. 11:50-68(2009).
2. PMID:21210939 "microRNA complements in deuterostomes: origin and evolution of microRNAs" Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M Evol Dev. 13:15-27(2011).