miRBase entry: spu-mir-2003

Stem-loop spu-mir-2003


Accession
MI0010273
Description
Strongylocentrotus purpuratus spu-mir-2003 precursor miRNA
Gene family
MIPF0002049; mir-2003


Sequence

gcugguuggccuaAACCCGUAAGGUCUUAACUUGUGcuggaguuacaaguacaCAGGUUAUGCCCUUUGGGUAGUAggccggacagaaua
.(((..(((((((.(((((.((((.(.((((((((((((......).))..))))))))).).)))))))))..)))))))..)))....

Structure
---g   gu       -A     U    U U         --  - ga 
    cug  uggccua  ACCCG AAGG C UAACUUGUG  cu g  g
    |||  |||||||  ||||| |||| | |||||||||  || |   
    gac  gccggAU  UGGGU UUCC G AUUGGACac  ga c  u
auaa   ag       GA     -    C U         au  a au 


Annotation confidence Not enough data
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Genome context
KN914398.1: 1117967-1118056 [-]

Database links

Mature spu-miR-2003-5p

Accession MIMAT0009744
Description Strongylocentrotus purpuratus spu-miR-2003-5p mature miRNA
Sequence 14 - AACCCGUAAGGUCUUAACUUGUG - 36
Evidence experimental
454 [1]

Mature spu-miR-2003-3p

Accession MIMAT0019166
Description Strongylocentrotus purpuratus spu-miR-2003-3p mature miRNA
Sequence 54 - CAGGUUAUGCCCUUUGGGUAGUA - 76
Evidence experimental
454 [2]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68

  2. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27