miRBase entry: spu-mir-2013

Stem-loop spu-mir-2013


Accession
MI0010271
Description
Strongylocentrotus purpuratus spu-mir-2013 precursor miRNA
Gene family
MIPF0001777; mir-2013


Sequence

ugaugucuacuguucuacgccgcuacaucuaguugcauugugacgucuguuucagggaaaUGCAGCAUGAUGUAGUGGUGUagcucaguaagaccauucca
....((((((((..(((((((((((((((..((((((((......((((...))))..))))))))..)))))))))))))))..)))).)))).......

Structure
---ugau    -    uu               ua        gugacg    u 
       gucu acug  cuacgccgcuacauc  guugcauu      ucug  
       |||| ||||  |||||||||||||||  ||||||||      |||| u
       caga ugac  gaUGUGGUGAUGUAG  CGACGUaa      ggac  
accuuac    a    uc               UA        ----ag    u 


Annotation confidence Not enough data
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Genome context
KN920327.1: 71865-71965 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from spu-mir-2013
Name Accession Chromosome Start End Strand Confidence




Database links

Mature spu-miR-2013

Accession MIMAT0009742
Description Strongylocentrotus purpuratus spu-miR-2013 mature miRNA
Sequence 61 - UGCAGCAUGAUGUAGUGGUGU - 81
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68