miRBase entry: sko-mir-2008

Stem-loop sko-mir-2008


Accession
MI0010267
Description
Saccoglossus kowalevskii sko-mir-2008 precursor miRNA
Gene family
MIPF0000729; mir-2008


Sequence

uucuucaucuuuuacuccguauuaacacugagguugauguucgcaguaacuaaccAUCAGCCUCGCUGUCAAUACGGcguaacugaugguag
....(((((..((((.(((((((.(((.(((((((((((...............))))))))))).))).))))))).))))..)))))...

Structure
uucu     uu    u       a   c           uucgca 
    ucauc  uuac ccguauu aca ugagguugaug      g
    |||||  |||| ||||||| ||| |||||||||||      u
    gguag  aaug GGCAUAA UGU GCUCCGACUAc      a
-gau     uc    c       C   C           caauca 


Annotation confidence Not enough data
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Genome context
GL013559.1: 116427-116518 [-]

Database links

Mature sko-miR-2008

Accession MIMAT0009738
Description Saccoglossus kowalevskii sko-miR-2008 mature miRNA
Sequence 56 - AUCAGCCUCGCUGUCAAUACGG - 77
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68