miRBase entry: sko-mir-2013

Stem-loop sko-mir-2013


Accession
MI0010266
Description
Saccoglossus kowalevskii sko-mir-2013 precursor miRNA


Sequence

uggaauaucugcucuuuacugcacaucgcuauuucuugcuggcaccaucugauuaaaggUGCAGCAUGAUGUAGUGGUGUGcaguggaguaaauaaaca
.....(((.((((((..(((((((((((((((.((.(((((.((((...........))))))))).)).))))))))))))))))))))).)))....

Structure
uggaa   c      uu               u  u     g    aucu 
     uau ugcucu  acugcacaucgcuau uc ugcug cacc    g
     ||| ||||||  ||||||||||||||| || ||||| ||||    a
     aua augagg  ugacGUGUGGUGAUG AG ACGAC GUgg    u
-acaa   a      --               U  U     -    aaau 


Annotation confidence Not enough data
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Genome context
GL012876.1: 115044-115142 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sko-mir-2013
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sko-miR-2013

Accession MIMAT0009737
Description Saccoglossus kowalevskii sko-miR-2013 mature miRNA
Sequence 60 - UGCAGCAUGAUGUAGUGGUGUG - 81
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68