miRBase entry: nve-mir-2022

Stem-loop nve-mir-2022


Accession
MI0010263
Description
Nematostella vectensis nve-mir-2022 precursor miRNA


Sequence

12980 reads, 14960 reads per million, 24 experiments
agaucgccugaaagucGGGAUAAAUCAACUGUCAAGUGguugucaUUUGCUAGUUGCUUUUGUCCCGCcuuuucu
.........(((((.(((((((((.((((((.((((((.....)))))).))))))..))))))))).)))))..

Structure
agaucgccu     u         -U      U      g 
         gaaag cGGGAUAAA  CAACUG CAAGUG u
         ||||| |||||||||  |||||| |||||| u
         uuuuc GCCCUGUUU  GUUGAU GUUUac g
-------uc     C         UC      C      u 


Annotation confidence High
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Genome context
scaffold_148: 501359-501433 [+]

Database links

Mature nve-miR-2022-3p

Accession MIMAT0009734
Description Nematostella vectensis nve-miR-2022-3p mature miRNA
Sequence 46 - UUUGCUAGUUGCUUUUGUCCCGC - 68
Evidence experimental
454 [1-2]

Mature nve-miR-2022-5p

Accession MIMAT0032100
Description Nematostella vectensis nve-miR-2022-5p mature miRNA
Sequence 17 - GGGAUAAAUCAACUGUCAAGUG - 38
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68

  2. PubMed ID: 18830242
    Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
    "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
    "Nature (2008) 455:1193-1197

  3. PubMed ID: 24642861
    Cnidarian microRNAs frequently regulate targets by cleavage
    "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
    "Genome Res (2014) 24:651-663